But doesn't Competitor Bulletin #06-1 still hold, that they can adjust the weight / fuel capacity in the interests of 'performance adjustments'?
Yes, #06-01 will still hold, giving them the ability to adjust. The new bulletin simply puts them back to where they were in regards to fuel and weight. The Astons still have the larger restrictor to give them the advantage over the Vettes. If IMSA were to resize that, they would issue another bulletin for that as well. They can't just say "Refer to competitor bulletin #06-14 for current rules". Every time something is changed, a new bulletin is issued.